PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G014400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family E2F/DP
Protein Properties Length: 325aa    MW: 36648 Da    PI: 4.6306
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G014400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.54.1e-2785150171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+kf++l++ +++g+++ln  a+ L   +v  ++RRiYDi+NVLe++ liek++kn+i+wkg
  Manes.18G014400.1.p  85 RYDSSLGLLTKKFVQLIQDAKDGTLDLNRTADML---EV--QKRRIYDITNVLEGIALIEKTSKNHIQWKG 150
                          6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-2882150IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-1785148IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.5E-3585150IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.5E-2587150IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.87E-33161266No hitNo description
SuperFamilySSF1440748.11E-25163263No hitNo description
PfamPF164211.2E-23166263IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MYFIILQSEI LLKQNNEKDN HEVQYSGQAT FPPHSKLVAD STLDPHSSTG SKRNSGSKVP  60
KDAKFETQRS NAESILGLNP ATGCRYDSSL GLLTKKFVQL IQDAKDGTLD LNRTADMLEV  120
QKRRIYDITN VLEGIALIEK TSKNHIQWKG YGGCGPKELY NHVTKLKTEV ESLRDEEIRL  180
DESIREKQEL LRALKEDENN KRHLFLMEED IASLPCFQNG MLIAIKAPQA SYLEVPDPDG  240
DIGPPQYKMI ARSNTGPIDL YLLRVESEDQ QNDQNNVAEL YSSAYSESSG IQKIIPSDYD  300
IDDDYWFQSN PIVSISELWG TDNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-2780152275PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510521.11e-157PREDICTED: transcription factor E2FC
SwissprotQ9FV701e-91E2FC_ARATH; Transcription factor E2FC
TrEMBLB9R8781e-157B9R878_RICCO; E2F4,5, putative
STRINGVIT_18s0001g14110.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.21e-87E2F/DP family protein